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Zhang W, Lyu L, Xu Z, Ni J, Wang D, Lu J*, Yao Y* . Integrative DNA methylome and transcriptome analysis reveals DNA adenine methylation is involved in Salmonella enterica typhimurium response to oxidative str ess. Microbiology Spectrum, 2023, 11(6), e0247923
2. Ni J, Li S, Lai Y, Wang Z, Wang D, Tan Y, Fan Y, Lu J*, Yao Y*. Global profiling of ribosomal protein acetylation reveals essentiality of acetylation homeostasis in maintaining ribosome assembly and function. Nucleic Acids Res, 2023, 51 (19), 10411-10427
3. Tang H, Huang W, Yao Y*. The metabolites of lactic acid bacteria: classification, biosynthesis and modulation of gut microbiota. Microb Cell. 2023, 10(3):49-62
4. Wang D, Ni J, Li J, Gao Y, Ni F, Zhang Z, Fang J, Lu J*, Yao Y*. Bacterial infection promotes tumorigenesis of colorectal cancer via regulating CDC42 acetylation, PLoS Pathog. 2023, 19(2):e1011189
5. Wang Z, Zhu S, Li C, Lyu L, Yu J, Wang D, Xu Z, Ni J, Gao B, Lu J*, Yao Y*. Gene essentiality profiling reveals a novel determinant of stresses preventing protein aggregation in Salmonella. Emerg Microbes Infect. 2022, 11(1): 1554-71
6. Sun Z, Zhou N, Zhang W, Xu Y, Yao Y*. Dual role of CsrA in regulating the hemolytic activity of Escherichia coli O157:H7. Virulence. 2022, 13(1): 859-74
7. Su Y, Li J, Zhang W, Ni J, Huang R, Wang Z, Cheng S, Wang Y, Tian Z, Zhou Q, Lin D, Wu W, Tang CM, Liu X*, Lu J*, Yao Y*. Methylation of PhoP by CheR regulates Salmonella virulence. mBio. 2021, 12(5): e02099-21
8. Li J, Liu S, Su Y, Ren J, Sang Y, Ni J, Lu J*, Yao Y*. Acetylation of PhoP K88 is involved in regulating Salmonella virulence. Infect Immun. 2021, 89(3): e00588-20
9. Huang W, Wang D, Yao Y*. Understanding the pathogenesis of infectious diseases by single-cell RNA sequencing. Microb Cell. 2021, 8(9):208-22 (invited review)
10. Zhou A, Li J, Xu Z, Ni J, Guo J, Yao Y*, Wu W*. Whole-genome comparative and pathogenicity analysis of Salmonella enterica subsp. enterica serovar Rissen. G3:Genes Genomes Genetics. 2020, 10(7): 2159-70
11. Ren J, Sang Y, Qin R, Su Y, Cui Z, Mang Z, Li H, Lu S, Zhang J, Cheng S, Liu X, Li J, Lu J, Wu W, Zhao GP, Shao F, Yao Y*. Metabolic intermediate acetyl phosphate modulates bacterial virulence via acetylation. Emerg Microbes Infect. 2019, 8(1): 55-69
12. Xu Z, Zhou A, Wu J, Zhou A, Li J, Zhang S, Wu W, Karakousis PC, Yao Y*. Transcriptional approach for decoding the mechanism of rpoC compensatory mutations for the fitness cost in rifampicin-resistant Mycobacterium tuberculosis. Front Microbiol. 2018, 9:2895
13. Yu X, Fu F, Kong W, Xuan Q, Wen D, Chen X, He Y, He L, Guo J, Zhou A, Xi Y, Ni L, Yao Y*, Wu W*. Streptococcus agalactiae inhibits Candida albicans hyphal development and diminishes host vaginal mucosal TH17 response. Front Microbiol. 2018, 9:198
14. Ren J, Sang Y, Lu J, Yao Y*. 6S RNA is involved in acid resistance and invasion of epithelial cells in Salmonella enterica serovar Typhimurium. Future Microbiol. 2017, 12:1045-57
15. Ren J, Sang Y, Lu J, Yao Y*. Protein acetylation and its role in bacterial virulence. Trends Microbiol. 2017, 25(9):768-79 (invited review)
16. Li S, Zhang Q, Xu Z, Yao Y*. Acetylation of lysine 243 inhibits the oriC binding ability of DnaA in Escherichia coli. Front Microbiol. 2017, 8:699
17. Sang Y, Ren J, Qin R, Liu S, Cui Z, Cheng S, Liu X, Lu J, Tao J*, Yao Y*. Acetylation regulating protein stability and DNA-binding ability of HilD, thus modulating Salmonella Typhimurium virulence. J Infect Dis. 2017, 216(8):1018-26 (cover story)
18. Wan B, Zhang Q, Ni J, Li S, Wen D, Li J, Xiao H, He P, Ou H, Tao J, Teng Q, Lu J, Wu W*, Yao Y*. Type VI secretion system contributes to Enterohemorrhagic Escherichia coli virulence by secreting catalase against host reactive oxygen species (ROS). PLoS Pathog. 2017, 13(3): e1006246
19. Qin R, Sang Y, RenJ, Zhang Q, Li S, Cui Z*, Yao Y*.The bacterial two-hybrid system uncovers the involvement of acetylation in regulating of Lrp activity in Salmonella Typhimurium. Front Microbiol. 2016, 7:1864
20. Zhang Q, Zhou A, Li S, Ni J, Tao J, Lu J, Wan B, Li S, Zhang J, Zhao S, Zhao GP, Shao F, Yao Y*. Reversible lysine acetylation is involved in DNA replication initiation by regulating activities of initiator DnaA in Escherichia coli. Sci Rep. 2016, 6:30837
21. Ren J, Sang Y, Tan Y, Tao J, Ni J, Liu S, Fan X, Zhao W, Lu J, Wu W, Yao Y*. Acetylation of lysine 201 inhibits the DNA-binding ability of PhoP to regulate Salmonella virulence. PLoS Pathog. 2016, 12(3): e1005458 (cover story)
22. Wan B, Zhang Q, Tao J, Zhou A, Yao Y*, Ni J*. Global transcriptional regulation by H-NS and its biological influence on the virulence of Enterohemorrhagic Escherichia coli. Gene. 2016, 588(2):115-23
23. Sang Y, Ren J, Ni J, Tao J, Lu J, Yao Y*. Protein acetylation is involved in Salmonella enterica serovar Typhimurium virulence and host inflammatory responses. J Infect Dis. 2016, 213 (11): 1836-45
24. Zhang Q, Wan B, Zhou A, Ni J, Xu Z, Li S, Tao J*, Yao Y*. Whole genome analysis of an MDR Beijing/W strain of Mycobacterium tuberculosis with large genomic 3 deletions associated with resistance to isoniazid. Gene. 2016, 582(2):128-36
25. Tan Y, Xu Z, Tao J, Ni J, Zhao W, Lu J, Yao Y*. A SIRT4-like auto ADP-ribosyltransferase is essential for the environmental growth of Mycobacterium smegmatis. Acta Bioch Bioph Sin. 2016, 48(2):145-52
26. Ren J, Yu S, Ni J, Tao J, Lu J, Zhao M*, Yao Y*. Acetylation regulates survival of Salmonella Typhimurium in acid stress. Appl Environ Microbiol. 2015, 81(17): 5675-82
27. Xu Z, Zhou A, Ni J, Zhang Q, Wang Y, Lu J, Wu W, Karakousis PC, Lu S*, Yao Y*. Differential expression of miRNAs and their relation to active tuberculosis. Tuberculosis. 2015, 95(4):395-403
28. Zhou A, Ni J, Xu Z, Wang Y, Lu S, W Wu, Karakousis PC, Yao Y*. Metabolomics specificity of tuberculosis plasma revealed by 1H-NMR spectroscopy. Tuberculosis. 2015, 95(3):294-302
29. Tao J, Sang Y, Teng Q, Ni J, Yang Y, Tsui S, Yao Y*. Heat shock proteins IbpA and IbpB are required for NlpI-participated cell division in Escherichia coli. Front Microbiol. 2015, 6:51
30. Zhou A, Ni J, Xu Z, Wang Y, Lu S, Sha W, Karakousis PC, Yao Y*. Application of 1H-NMR spectroscopy-based metabolomics to sera of tuberculosis patients. J Proteome Res. 2013, 12(10):4642-9
31. Zhou Y, Tao J, Yu H, Ni J, Zeng L, Teng Q, Kim KS, Zhao GP, Guo XK*, Yao Y*. Hcp-family proteins secreted via type VI secretion system coordinately regulate Escherichia coli K1 interaction with human brain microvascular endothelial cells. Infect & Immun, 2012, 80(3):1243-51
32. Zhou A, Nawaz M, Duan Y, Moore J, Millar C, Xu J*, Yao Y*. Molecular characterization of isoniazid resistant Mycobacterium tuberculosis isolates from Xi’an, China. Microb Drug Resist. 2011, 17(2):275-81
33. Zhou A, Nawaz M, Xue X, Karakousis P, Yao Y*, Xu J*. Molecular genotyping study of Mycobacterium tuberculosis in Xi’an, China using MIRU-VNTR typing system. Int J Tuberc Lung Dis. 2011, 15(4):517-22
34. Lu L, Sun Q, Fan X, Zhong Y, Yao Y*, Zhao GP. Mycobacterial MazG is a novel NTP pyrophosphohydrolase involved in oxidative stress response. J Biol Chem. 2010, 285(36):28076-85
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