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流行病學(xué)與生物統(tǒng)計學(xué)系

張成東/ 職稱:助理研究員

學(xué)歷學(xué)位:博士 研究生

Email:


張成東,復(fù)旦大學(xué)生物信息學(xué)博士,;長期致力于生物醫(yī)學(xué)領(lǐng)域的新型計算方法,、工具以及數(shù)據(jù)庫的研究或開發(fā),重視計算方法與特定實(shí)驗方法的結(jié)合,。研究的主要領(lǐng)域包括:1.基于機(jī)器學(xué)習(xí)/深度學(xué)習(xí)技術(shù)的基因編輯系統(tǒng)的優(yōu)化設(shè)計,;2.組學(xué)數(shù)據(jù)挖掘和知識發(fā)現(xiàn)研究。近五年共發(fā)表第一作者(包括共同一作)SCI文章9篇,,獲得專利1項,,軟件著作權(quán)1項。受邀擔(dān)任Frontiers in Genetics雜志的主題編輯,。



發(fā)表論文:

1. Chengdong Zhang#, Xuanxuan Jin#, Xianyang Chen#, Li Qiu, Qibin Leng*, Tianyi Qiu*. Antigenic evolution on a global scale reveals the potential natural selection of severe acute respiratory syndrome-coronavirus 2 by pre-existing cross-reactive T-cell immunity. Front. Microbiol.10.3389/fmicb.2021.599562

2. Ziying Hu#, Chengdong Zhang#, Shuai Wang et.al Discovery and engineering of small SlugCas9 with broad targeting range and high specificity and activity. Nucleic Acids Res. 2021 Apr 19;49(7):4008-4019. doi: 10.1093/nar/gkab148.

3. Li Qiu#, Chengdong Zhang#, Junbo Wu et.al Strong immunity against COVID-19 in the early two years of age links to frequent immunization of routine vaccines.Sci Bull (Beijing). 2020 Dec 30; 65(24): 2057–2060.

4. Daqi Wang#, Chengdong Zhang#, Bei Wang, Bin Li, Qiang Wang, Dong Liu, Hongyan Wang, Yan Zhou, Leming Shi, Feng Lan, Yongming Wang. Optimized CRISPR guide RNA design for two high-fidelity Cas9 variants by deep learning. Nature Communications volume 10, Article number: 4284 (2019)

5. Yuan Liu#, Chengdong Zhang#, Lei Li#, et.al Genome-wide Association Study of Tacrolimus Pharmacokinetics Identifies Novel Single Nucleotide Polymorphisms in the Convalescence and Stabilization Periods of Post-Transplant Liver Function, Front. Genet. doi: 10.3389/fgene.2019.00528

6. Cheng-Dong Zhang#, Yuan Yang#, et al.; RTPDB: a database providing associations between genetic variation or expression and cancer prognosis with radiotherapy-based treatment, Database, Volume 2018, Issue 1, 1 January 2018, bay118

7. Song Q#, Zhang CD#, Wu XH. Therapeutic cancer vaccines: From initial findings to prospects. Immunol Lett. 2018 Jan 30;196:11-21.

8. Liang L#, Man L#, Zhang C#, et al. Prognostic value and clinicopathologic significance of nm23 in various cancers: A systematic review and meta-analysis[J]. International Journal of Surgery, 2018.

9. Liu K#, Zhang Y#, Zhang C#, Zhang Q, et al. Methylation of S100A8 is a promising diagnosis and prognostic marker in hepatocellular carcinoma. Oncotarget. Impact Journals; 2016 Aug 30;7(35):56798–810.

10. Zhang C#, Deng X#, Zhang X#, Pan Z#, et al. Association between Serum TNF-alpha Levels and Recurrent Spontaneous Miscarriage: A Meta-analysis. Am J Reprod Immunol. 2016 Feb;75(2):8693.

11. Yang X#, Li H#, Zhang C#, Lin Z, Zhang X, Zhang Y, et al. Serum quantitative proteomic analysis reveals potential zinc-associated biomarkers for nonbacterial prostatitis. Prostate. 2015 Oct;75(14):153855.

12. Yang X-L#, Zhang C-D, Wu H-Y, Wu Y-H, Zhang Y-N, Qin M-B, et al. Effect of trichostatin A on CNE2 nasopharyngeal carcinoma cells--genome-wide DNA methylation alteration. Asian Pac J Cancer Prev. 2014;15(11):466370.

13. Zhang C-D#, Li H-T#, Liu K#, Lin Z-D, Peng Q-L, Qin X, et al. Impact of caspase-8 (CASP8) -652 6N del and D302H polymorphisms on prostate cancer in different ethnic groups. Asian Pac J Cancer Prev. 2014;15(18):77138.

14. 專利:人 NUDT2 PCDH8基因甲基化位點(diǎn)的檢測和應(yīng)用,,發(fā)明人:楊小麗,張悅寧,,劉坤,,李佳桐,張成東,,林志弟,,肖非凡,;證書號第 3381307 號; 專利號:ZL 2015 1 0546489.7

15. 軟件著作權(quán):科技文獻(xiàn)信息分析處理軟件V1.0,;申請人:楊小麗,,張成東,毛旭輝(登記號:2015SR054123